STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF50442.1Amidohydrolase. (653 aa)    
Predicted Functional Partners:
SDF71836.1
Glyoxalase family protein.
    
 0.747
SDF11791.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
    
  0.710
SDG06135.1
Regulator of RNase E activity RraA.
    
 0.538
SDF99750.1
L-fuconolactonase.
    
 0.537
SDF55706.1
Acyl transferase domain-containing protein.
  
 
 0.531
SDF65644.1
Predicted dehydrogenase.
  
 
  0.449
gcvT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
   
 
 0.439
SDF55971.1
HxxPF-repeated domain-containing protein.
    
 0.439
SDG09248.1
Mannose-6-phosphate isomerase, type 2.
    
  0.418
SDG20727.1
Cupin domain-containing protein.
    
  0.414
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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