STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF51281.1Pectate lyase. (372 aa)    
Predicted Functional Partners:
SDF02565.1
Listeria/Bacterioides repeat-containing protein/Por secretion system C-terminal sorting domain-containing protein.
  
 0.912
SDG15314.1
Por secretion system C-terminal sorting domain-containing protein.
  
  
  0.775
SDH64080.1
Pectinesterase.
  
 0.762
SDG00339.1
Conserved repeat domain-containing protein/gliding motility-associated C-terminal domain-containing protein.
  
     0.759
SDH66442.1
Pectate lyase.
  
  
 0.759
SDG91995.1
Right handed beta helix region.
  
     0.755
SDG20027.1
Glucuronoarabinoxylan endo-1,4-beta-xylanase.
  
     0.738
SDG18779.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.690
SDH58245.1
DNA sulfur modification protein DndE; Belongs to the glycosyl hydrolase 28 family.
 
  
 0.671
SDG27269.1
Por secretion system C-terminal sorting domain-containing protein.
 
     0.665
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.