STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF53214.1Iron complex outermembrane recepter protein. (811 aa)    
Predicted Functional Partners:
SDH29242.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
   
  
 0.821
SDF55873.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
   
  
 0.799
SDH29118.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
   
  
 0.799
SDH29138.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
   
  
 0.799
SDE92241.1
Uncharacterized iron-regulated membrane protein.
 
  
 0.599
SDG77402.1
Uncharacterized iron-regulated membrane protein.
 
  
 0.587
SDF07202.1
Uncharacterized iron-regulated membrane protein.
 
  
 0.573
SDF00447.1
Uncharacterized iron-regulated membrane protein.
 
  
 0.571
SDG94629.1
Hypothetical protein.
  
   0.503
SDG06254.1
Ferric-dicitrate binding protein FerR, regulates iron transport through sigma-19.
  
   0.468
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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