STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF56817.1Starch-binding associating with outer membrane. (557 aa)    
Predicted Functional Partners:
SDF56852.1
TonB-linked outer membrane protein, SusC/RagA family.
     0.935
SDF56779.1
O-Glycosyl hydrolase.
 
     0.828
SDF56750.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 35 family.
 
     0.798
SDF56888.1
Signal transduction histidine kinase.
 
     0.776
SDF51014.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.761
SDG61434.1
Iron complex outermembrane recepter protein.
  
 
   0.758
SDF57400.1
Iron complex outermembrane recepter protein.
  
     0.725
SDG80931.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.714
SDG23455.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.712
SDG80902.1
Starch-binding associating with outer membrane.
  
 
   0.712
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.