Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SDF60412.1Thioredoxin-like. (428 aa)    
Predicted Functional Partners:
SDF60444.1
AraC-type DNA-binding protein.
       0.732
SDF60387.1
SusD family protein.
   
   0.619
SDH43115.1
RHS repeat-associated core domain-containing protein.
  
     0.598
SDF49093.1
RHS repeat-associated core domain-containing protein.
  
     0.594
SDF49222.1
RHS repeat-associated core domain-containing protein.
  
     0.575
SDF49318.1
PA14 domain-containing protein.
  
     0.573
SDF49158.1
PA14 domain-containing protein.
  
     0.567
SDH43051.1
PA14 domain-containing protein.
  
     0.555
SDG00368.1
Endoglucanase.
  
 
   0.531
SDF70720.1
Hypothetical protein.
  
     0.524
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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