STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF61646.1SusD family protein. (452 aa)    
Predicted Functional Partners:
SDF61671.1
TonB-linked outer membrane protein, SusC/RagA family.
     0.916
SDF50799.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.802
SDH28449.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.775
SDF78444.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.767
SDF61618.1
Thioredoxin-like.
 
     0.703
SDG21191.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.698
SDG72019.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.682
SDG72113.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.658
SDG21159.1
Starch-binding associating with outer membrane.
  
     0.635
SDF61562.1
Methylamine utilisation protein MauE.
  
     0.622
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.