Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDF61984.1 | SDF62007.1 | SAMN04488121_102463 | SAMN04488121_102464 | Hypothetical protein. | Helix-turn-helix. | 0.620 |
SDF61984.1 | SDF62030.1 | SAMN04488121_102463 | SAMN04488121_102465 | Hypothetical protein. | Hypothetical protein. | 0.620 |
SDF61984.1 | SDF62058.1 | SAMN04488121_102463 | SAMN04488121_102466 | Hypothetical protein. | Hypothetical protein. | 0.620 |
SDF62007.1 | SDF61984.1 | SAMN04488121_102464 | SAMN04488121_102463 | Helix-turn-helix. | Hypothetical protein. | 0.620 |
SDF62007.1 | SDF62030.1 | SAMN04488121_102464 | SAMN04488121_102465 | Helix-turn-helix. | Hypothetical protein. | 0.773 |
SDF62007.1 | SDF62058.1 | SAMN04488121_102464 | SAMN04488121_102466 | Helix-turn-helix. | Hypothetical protein. | 0.773 |
SDF62007.1 | SDG08203.1 | SAMN04488121_102464 | SAMN04488121_103405 | Helix-turn-helix. | Competence/damage-inducible protein cinA; Belongs to the CinA family. | 0.711 |
SDF62007.1 | SDG43407.1 | SAMN04488121_102464 | SAMN04488121_104251 | Helix-turn-helix. | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | 0.456 |
SDF62007.1 | SDG61744.1 | SAMN04488121_102464 | SAMN04488121_105210 | Helix-turn-helix. | Serine/threonine-protein kinase HipA. | 0.464 |
SDF62007.1 | SDG61770.1 | SAMN04488121_102464 | SAMN04488121_105211 | Helix-turn-helix. | Serine/threonine-protein kinase HipA. | 0.464 |
SDF62007.1 | SDH48246.1 | SAMN04488121_102464 | SAMN04488121_11320 | Helix-turn-helix. | HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes. | 0.630 |
SDF62007.1 | nadE | SAMN04488121_102464 | SAMN04488121_101710 | Helix-turn-helix. | NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. | 0.585 |
SDF62030.1 | SDF61984.1 | SAMN04488121_102465 | SAMN04488121_102463 | Hypothetical protein. | Hypothetical protein. | 0.620 |
SDF62030.1 | SDF62007.1 | SAMN04488121_102465 | SAMN04488121_102464 | Hypothetical protein. | Helix-turn-helix. | 0.773 |
SDF62030.1 | SDF62058.1 | SAMN04488121_102465 | SAMN04488121_102466 | Hypothetical protein. | Hypothetical protein. | 0.773 |
SDF62058.1 | SDF61984.1 | SAMN04488121_102466 | SAMN04488121_102463 | Hypothetical protein. | Hypothetical protein. | 0.620 |
SDF62058.1 | SDF62007.1 | SAMN04488121_102466 | SAMN04488121_102464 | Hypothetical protein. | Helix-turn-helix. | 0.773 |
SDF62058.1 | SDF62030.1 | SAMN04488121_102466 | SAMN04488121_102465 | Hypothetical protein. | Hypothetical protein. | 0.773 |
SDG08203.1 | SDF62007.1 | SAMN04488121_103405 | SAMN04488121_102464 | Competence/damage-inducible protein cinA; Belongs to the CinA family. | Helix-turn-helix. | 0.711 |
SDG08203.1 | SDH48246.1 | SAMN04488121_103405 | SAMN04488121_11320 | Competence/damage-inducible protein cinA; Belongs to the CinA family. | HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes. | 0.936 |
page 1 of 2