Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDF50141.1 | SDF50176.1 | SAMN04488121_102107 | SAMN04488121_102108 | Magnesium chelatase subunit D. | Mg-chelatase subunit ChlD. | 0.999 |
SDF50141.1 | SDF65361.1 | SAMN04488121_102107 | SAMN04488121_102560 | Magnesium chelatase subunit D. | Methyltransferase domain-containing protein. | 0.589 |
SDF50176.1 | SDF50141.1 | SAMN04488121_102108 | SAMN04488121_102107 | Mg-chelatase subunit ChlD. | Magnesium chelatase subunit D. | 0.999 |
SDF50176.1 | SDF65361.1 | SAMN04488121_102108 | SAMN04488121_102560 | Mg-chelatase subunit ChlD. | Methyltransferase domain-containing protein. | 0.589 |
SDF65320.1 | SDF65361.1 | SAMN04488121_102559 | SAMN04488121_102560 | Polysaccharide deacetylase family protein, PEP-CTERM locus subfamily. | Methyltransferase domain-containing protein. | 0.773 |
SDF65361.1 | SDF50141.1 | SAMN04488121_102560 | SAMN04488121_102107 | Methyltransferase domain-containing protein. | Magnesium chelatase subunit D. | 0.589 |
SDF65361.1 | SDF50176.1 | SAMN04488121_102560 | SAMN04488121_102108 | Methyltransferase domain-containing protein. | Mg-chelatase subunit ChlD. | 0.589 |
SDF65361.1 | SDF65320.1 | SAMN04488121_102560 | SAMN04488121_102559 | Methyltransferase domain-containing protein. | Polysaccharide deacetylase family protein, PEP-CTERM locus subfamily. | 0.773 |
SDF65361.1 | SDG65169.1 | SAMN04488121_102560 | SAMN04488121_105363 | Methyltransferase domain-containing protein. | Hypothetical protein. | 0.466 |
SDF65361.1 | SDG90063.1 | SAMN04488121_102560 | SAMN04488121_107160 | Methyltransferase domain-containing protein. | Polynucleotide kinase-phosphatase. | 0.454 |
SDF65361.1 | SDH12828.1 | SAMN04488121_102560 | SAMN04488121_10918 | Methyltransferase domain-containing protein. | RNA ligase. | 0.430 |
SDF65361.1 | SDH12906.1 | SAMN04488121_102560 | SAMN04488121_10919 | Methyltransferase domain-containing protein. | HDIG domain-containing protein. | 0.430 |
SDF65361.1 | SDH49804.1 | SAMN04488121_102560 | SAMN04488121_11364 | Methyltransferase domain-containing protein. | Predicted kinase. | 0.430 |
SDF65361.1 | gcvP | SAMN04488121_102560 | SAMN04488121_10369 | Methyltransferase domain-containing protein. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.572 |
SDF65361.1 | glyA | SAMN04488121_102560 | SAMN04488121_101462 | Methyltransferase domain-containing protein. | Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.497 |
SDG65169.1 | SDF65361.1 | SAMN04488121_105363 | SAMN04488121_102560 | Hypothetical protein. | Methyltransferase domain-containing protein. | 0.466 |
SDG90063.1 | SDF65361.1 | SAMN04488121_107160 | SAMN04488121_102560 | Polynucleotide kinase-phosphatase. | Methyltransferase domain-containing protein. | 0.454 |
SDG90063.1 | SDH12906.1 | SAMN04488121_107160 | SAMN04488121_10919 | Polynucleotide kinase-phosphatase. | HDIG domain-containing protein. | 0.428 |
SDH12828.1 | SDF65361.1 | SAMN04488121_10918 | SAMN04488121_102560 | RNA ligase. | Methyltransferase domain-containing protein. | 0.430 |
SDH12828.1 | SDH12906.1 | SAMN04488121_10918 | SAMN04488121_10919 | RNA ligase. | HDIG domain-containing protein. | 0.952 |
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