STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF66053.1Polysaccharide export outer membrane protein. (284 aa)    
Predicted Functional Partners:
SDF66013.1
Capsular exopolysaccharide family.
 0.999
SDG09193.1
Capsular exopolysaccharide family.
 0.997
SDH28029.1
Capsular exopolysaccharide family.
 0.997
SDH02356.1
Uncharacterized protein involved in exopolysaccharide biosynthesis.
 
 0.991
SDH28197.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
 
 0.957
SDG09163.1
Polysaccharide export outer membrane protein.
  
  
 
0.847
SDF66087.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
  
 
 0.818
SDF65927.1
UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing); Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
    
 0.700
SDF65526.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
 
 0.697
SDF65893.1
Membrane protein involved in the export of O-antigen and teichoic acid.
 
  
 0.682
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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