STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF77166.1Cupin domain-containing protein. (193 aa)    
Predicted Functional Partners:
SDF77147.1
4-carboxymuconolactone decarboxylase.
 
 
  0.944
SDF77121.1
Pimeloyl-ACP methyl ester carboxylesterase.
 
     0.847
SDF77193.1
2TM domain-containing protein.
       0.773
SDF77096.1
Protease I.
 
  
  0.608
SDG91480.1
Quinol monooxygenase YgiN.
  
    0.604
SDF77251.1
Two-component sensor histidine kinase, contains HisKA and HATPase domains.
 
     0.595
SDG21539.1
Hypothetical protein.
  
     0.548
SDH44881.1
Regulatory protein, luxR family.
  
     0.539
SDH21401.1
N-acetylmuramoyl-L-alanine amidase.
  
     0.519
SDF55706.1
Acyl transferase domain-containing protein.
 
  
 0.494
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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