STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF99721.1L-rhamnose mutarotase. (110 aa)    
Predicted Functional Partners:
SDF99750.1
L-fuconolactonase.
 
  
 0.929
SDF99778.1
L-fucose dehydrogenase.
 
    0.880
SDF99689.1
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
 
     0.860
SDF99629.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
    0.815
SDF99807.1
MFS transporter, FHS family, L-fucose permease.
 
  
 0.735
SDF68448.1
Sugar (pentulose or hexulose) kinase.
  
  
 0.613
SDF26176.1
Gluconate kinase, FGGY family; Belongs to the FGGY kinase family.
  
  
 0.594
SDF97526.1
Xylulokinase.
  
  
 0.594
SDF99661.1
Hypothetical protein.
       0.590
SDG89289.1
2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
 
     0.451
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.