STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF96631.1Starch-binding associating with outer membrane. (564 aa)    
Predicted Functional Partners:
SDF96606.1
Iron complex outermembrane recepter protein.
 
     0.915
SDF96668.1
Hypothetical protein.
 
     0.848
SDF96741.1
Copper type II ascorbate-dependent monooxygenase, C-terminal domain.
  
     0.770
SDE91731.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.759
SDF83050.1
Starch-binding associating with outer membrane.
  
 
   0.718
SDH53697.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.688
SDF96653.1
Thiol-disulfide isomerase or thioredoxin.
 
     0.642
SDG44858.1
SusD family protein.
  
 
   0.622
SDH65360.1
Methyltransferase domain-containing protein.
  
     0.596
SDG00981.1
Chromosome partitioning protein, ParB family; Belongs to the ParB family.
  
 
 0.594
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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