STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG06086.1L-seryl-tRNA(Ser) seleniumtransferase. (414 aa)    
Predicted Functional Partners:
SDG06110.1
Dihydroorotase.
 
  
 0.943
SDG06064.1
Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family.
 
     0.873
SDG06135.1
Regulator of RNase E activity RraA.
 
     0.852
SDG56991.1
2-dehydro-3-deoxygluconokinase.
  
 
  0.820
SDG06040.1
Starch-binding associating with outer membrane.
 
     0.795
SDG06013.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.751
SDF81821.1
TrkA-N domain-containing protein.
   
    0.747
SDF07114.1
Molybdopterin synthase sulfur carrier subunit.
    
   0.698
SDG06155.1
Bile acid:Na+ symporter, BASS family.
 
     0.685
SDG27659.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
  
     0.585
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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