STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG11455.1Transcriptional regulator, GntR family. (242 aa)    
Predicted Functional Partners:
SDG11544.1
Mannose-6-phosphate isomerase, class I.
 
 
 0.887
SDH48246.1
HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes.
   
    0.825
SDG77115.1
SusE outer membrane protein.
 
     0.604
SDG11513.1
Glycosyl hydrolases family 38 N-terminal domain-containing protein.
 
     0.596
SDG11610.1
Glucokinase.
 
 
 0.572
SDG11488.1
Hypothetical protein.
       0.569
SDG43407.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.561
SDG11425.1
Hypothetical protein.
       0.543
SDH05383.1
Signal transduction histidine kinase.
  
     0.505
SDG47425.1
N-acetylglucosamine 6-phosphate deacetylase.
  
  
 0.467
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.