STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF97683.1CarboxypepD_reg-like domain-containing protein. (239 aa)    
Predicted Functional Partners:
SDG94629.1
Hypothetical protein.
  
   0.571
SDF78940.1
Starch-binding associating with outer membrane.
  
 
   0.566
SDG72091.1
Starch-binding associating with outer membrane.
  
 
   0.559
SDG71993.1
Starch-binding associating with outer membrane.
  
 
   0.550
SDF97613.1
Uncharacterized conserved protein YjbJ, UPF0337 family; Belongs to the UPF0337 (CsbD) family.
       0.529
SDF97648.1
Hypothetical protein.
       0.529
SDH01722.1
Smr domain-containing protein.
  
     0.497
SDG73746.1
Periplasmic chaperone for outer membrane proteins Skp.
  
     0.478
SDG50210.1
TPR repeat-containing protein.
  
     0.461
SDF15336.1
Protein of unknown function.
  
     0.460
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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