STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG13839.1FecR protein. (385 aa)    
Predicted Functional Partners:
SDE97874.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.781
SDF83777.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.772
SDF78419.1
Ferric-dicitrate binding protein FerR, regulates iron transport through sigma-19.
  
     0.772
SDH18221.1
Ferric-dicitrate binding protein FerR, regulates iron transport through sigma-19.
  
     0.772
SDG23163.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.764
SDF62661.1
Ferric-dicitrate binding protein FerR, regulates iron transport through sigma-19.
  
     0.760
SDG38127.1
RNA polymerase sigma factor, sigma-70 family.
  
   0.725
SDF82296.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.661
SDE91784.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.643
SDH20679.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.633
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.