SDG16097.1 protein (Chitinophaga filiformis)

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second shell of interactors

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a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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Score

SDG16097.1

Por secretion system C-terminal sorting domain-containing protein. (486 aa)

Predicted Functional Partners:

SDG04231.1

0.831

SDH15759.1

0.756

SDG61297.1

0.730

SDG37328.1

0.717

SDF57915.1

0.703

SDE97353.1

0.679

SDG88732.1

0.678

SDG28016.1

0.670

SDG16061.1

0.664

SDH13355.1

0.664

Your Current Organism:

Chitinophaga filiformis

NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDE97353.1	SDG16097.1	SAMN04488121_101381	SAMN04488121_103676	Hypothetical protein.	Por secretion system C-terminal sorting domain-containing protein.	0.679
SDE97353.1	SDG28016.1	SAMN04488121_101381	SAMN04488121_1031067	Hypothetical protein.	Hypothetical protein.	0.454
SDE97353.1	SDG61297.1	SAMN04488121_101381	SAMN04488121_105194	Hypothetical protein.	Hypothetical protein.	0.687
SDE97353.1	SDH13355.1	SAMN04488121_101381	SAMN04488121_10935	Hypothetical protein.	Dual-action HEIGH metallo-peptidase.	0.548
SDF57915.1	SDG04231.1	SAMN04488121_102325	SAMN04488121_103263	Por secretion system C-terminal sorting domain-containing protein.	Chitinase.	0.432
SDF57915.1	SDG16097.1	SAMN04488121_102325	SAMN04488121_103676	Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.703
SDF57915.1	SDG28016.1	SAMN04488121_102325	SAMN04488121_1031067	Por secretion system C-terminal sorting domain-containing protein.	Hypothetical protein.	0.651
SDF57915.1	SDG88732.1	SAMN04488121_102325	SAMN04488121_107119	Por secretion system C-terminal sorting domain-containing protein.	Dual-action HEIGH metallo-peptidase.	0.475
SDF57915.1	SDH15759.1	SAMN04488121_102325	SAMN04488121_109115	Por secretion system C-terminal sorting domain-containing protein.	Dual-action HEIGH metallo-peptidase.	0.640
SDG04231.1	SDF57915.1	SAMN04488121_103263	SAMN04488121_102325	Chitinase.	Por secretion system C-terminal sorting domain-containing protein.	0.432
SDG04231.1	SDG16097.1	SAMN04488121_103263	SAMN04488121_103676	Chitinase.	Por secretion system C-terminal sorting domain-containing protein.	0.831
SDG04231.1	SDG37328.1	SAMN04488121_103263	SAMN04488121_10436	Chitinase.	Hypothetical protein.	0.751
SDG04231.1	SDG88732.1	SAMN04488121_103263	SAMN04488121_107119	Chitinase.	Dual-action HEIGH metallo-peptidase.	0.709
SDG04231.1	SDH15759.1	SAMN04488121_103263	SAMN04488121_109115	Chitinase.	Dual-action HEIGH metallo-peptidase.	0.753
SDG16061.1	SDG16097.1	SAMN04488121_103675	SAMN04488121_103676	Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.664
SDG16097.1	SDE97353.1	SAMN04488121_103676	SAMN04488121_101381	Por secretion system C-terminal sorting domain-containing protein.	Hypothetical protein.	0.679
SDG16097.1	SDF57915.1	SAMN04488121_103676	SAMN04488121_102325	Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.703
SDG16097.1	SDG04231.1	SAMN04488121_103676	SAMN04488121_103263	Por secretion system C-terminal sorting domain-containing protein.	Chitinase.	0.831
SDG16097.1	SDG16061.1	SAMN04488121_103676	SAMN04488121_103675	Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.664
SDG16097.1	SDG28016.1	SAMN04488121_103676	SAMN04488121_1031067	Por secretion system C-terminal sorting domain-containing protein.	Hypothetical protein.	0.670

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Network Stats

number of nodes:

11

number of edges:

54

average node degree:

9.82

avg. local clustering coefficient:

0.982

expected number of edges:

24

PPI enrichment p-value:

1.44e-07

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006364

rRNA processing

9 of 197

1.18

1.47

7.40e-07

GO:0016070

RNA metabolic process

11 of 699

0.72

0.67

8.59e-06

GO:0010467

Gene expression

11 of 942

0.59

0.51

0.00012

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0030515

snoRNA binding

4 of 35

1.58

1.13

0.0036

GO:0003676

Nucleic acid binding

10 of 839

0.6

0.45

0.0036

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0030686

90S preribosome

5 of 36

1.66

2.02

1.30e-05

GO:0030684

Preribosome

7 of 90

1.41

1.93

6.45e-07

GO:0032040

Small-subunit processome

5 of 43

1.58

1.91

1.47e-05

GO:0005730

Nucleolus

11 of 263

1.14

1.63

3.01e-10

GO:0070545

PeBoW complex

2 of 3

2.34

1.19

0.0063

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:2532

Preribosome, and ATP-dependent RNA helicase DEAD-box, conserved site

9 of 96

1.49

2.64

3.65e-10

CL:2635

Preribosome, large subunit precursor, and Ribosomal large subunit biogenesis

5 of 43

1.58

1.97

9.11e-06

CL:2543

Small-subunit processome

4 of 32

1.62

1.64

0.00015

CL:2544

90S preribosome, and Positive regulation of transcription by RNA polymerase I

3 of 17

1.77

1.43

0.0010

CL:1507

RNA polymerase I complex

2 of 5

2.12

1.13

0.0073

(more ...)

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-6791226

Major pathway of rRNA processing in the nucleolus and cytosol

7 of 168

1.14

0.00011

MAP-8868773

rRNA processing in the nucleus and cytosol

7 of 171

1.13

0.00011

MAP-72312

rRNA processing

7 of 174

1.12

0.00011

MAP-8953854

Metabolism of RNA

7 of 496

0.67

0.4

0.0354

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0030684

Preribosome

6 of 86

1.36

1.45

7.73e-05

GOCC:0032040

Small-subunit processome

4 of 36

1.56

1.25

0.0016

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0698

rRNA processing

5 of 19

1.94

2.79

7.00e-07

KW-0690

Ribosome biogenesis

5 of 20

1.92

2.76

7.00e-07

KW-0539

Nucleus

5 of 240

0.84

0.5

0.0284

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