STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG18779.1Por secretion system C-terminal sorting domain-containing protein. (633 aa)    
Predicted Functional Partners:
SDG18747.1
Alpha-glucosidase.
     0.769
SDF02565.1
Listeria/Bacterioides repeat-containing protein/Por secretion system C-terminal sorting domain-containing protein.
  
     0.738
SDG91995.1
Right handed beta helix region.
  
     0.705
SDH66442.1
Pectate lyase.
  
  
  0.704
SDF51281.1
Pectate lyase.
  
     0.690
SDH45376.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.686
SDH45399.1
SusD family protein.
  
     0.682
SDF03674.1
Pectate lyase.
  
     0.660
SDF49417.1
WGR domain-containing protein, predicted DNA-binding domain in MolR.
  
     0.578
SDG04231.1
Chitinase.
     
 0.561
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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