STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG43853.1Phenylacetic acid degradation protein paaN. (552 aa)    
Predicted Functional Partners:
SDF55706.1
Acyl transferase domain-containing protein.
  
 0.936
SDH29242.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.910
SDF56003.1
Phosphopantetheine attachment site.
  
 0.879
SDF23468.1
Glutamate synthase (NADH) large subunit.
  
 
 0.873
SDF11791.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
 
 
 0.788
SDF25219.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC.
  
  
 0.763
SDG41922.1
Allosteric NADP-dependent malic enzyme.
  
 
 0.757
SDF25151.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA.
  
  
 0.746
SDF25186.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB.
 
  
 0.739
SDF25253.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD.
  
  
 0.739
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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