STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG60851.1Starch-binding associating with outer membrane. (512 aa)    
Predicted Functional Partners:
SDG60825.1
TonB-linked outer membrane protein, SusC/RagA family.
 
   0.943
SDH44458.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.787
SDF47638.1
Carbohydrate binding module (family 6); Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
 
   0.768
SDF74546.1
Regulatory protein, luxR family.
  
     0.738
SDG60161.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.674
SDG60472.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.669
SDG60912.1
Glycosyl hydrolases family 16.
 
     0.649
SDF57400.1
Iron complex outermembrane recepter protein.
  
     0.648
SDG61434.1
Iron complex outermembrane recepter protein.
 
 
   0.648
SDG60881.1
Hypothetical protein.
       0.645
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.