STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG72463.1TIGR02452 family protein. (289 aa)    
Predicted Functional Partners:
SDG77801.1
Hypothetical protein.
   
 0.961
SDF02367.1
Hypothetical protein.
     0.927
SDG72445.1
Serine/threonine protein phosphatase 1.
 
     0.712
SDG10427.1
Ricin-type beta-trefoil lectin domain-like.
  
     0.702
SDF09425.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.655
SDH07176.1
Hypothetical protein.
  
     0.642
SDF51317.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.619
SDH06987.1
Terpene synthase family, metal binding domain.
  
     0.586
SDE95785.1
Glycosyl hydrolase catalytic core.
  
     0.583
kptA
Putative RNA 2'-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase.
 
   
 0.573
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.