STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG73646.1Hypothetical protein. (450 aa)    
Predicted Functional Partners:
SDG73675.1
TonB-dependent receptor.
 
     0.912
SDF06196.1
Outer membrane receptor proteins, mostly Fe transport.
     0.791
SDG24792.1
TonB-dependent receptor.
  
     0.744
SDG73630.1
Hypothetical protein.
       0.741
SDG46501.1
Beta-barrel assembly machine subunit BamA.
  
 
 0.551
SDE87285.1
Tetratricopeptide repeat-containing protein.
  
    0.538
SDG08098.1
Tetratricopeptide repeat-containing protein.
  
 
 0.502
SDG26464.1
NTE family protein.
  
 
 0.496
SDF23622.1
Surface antigen.
   
 
 0.478
SDF63394.1
Surface antigen.
   
 
 0.478
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.