STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG94828.1Uncharacterized conserved protein YkwD, contains CAP (CSP/antigen 5/PR1) domain. (176 aa)    
Predicted Functional Partners:
SDG41922.1
Allosteric NADP-dependent malic enzyme.
 
  
 0.834
SDF26743.1
Beta-glucosidase.
  
 
  0.587
SDG76728.1
Collagen triple helix repeat-containing protein.
  
    0.552
fbp
D-fructose 1,6-bisphosphatase; Belongs to the FBPase class 1 family.
     
 0.545
SDG92402.1
Por secretion system C-terminal sorting domain-containing protein.
    
 0.536
pckA
Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.
    
  0.533
SDG94797.1
ABC-2 type transport system ATP-binding protein.
   
 
 0.506
fumC
Fumarase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
    
  0.502
mqo
Malate dehydrogenase (quinone).
    
  0.483
SDF81086.1
Chaperone of endosialidase.
   
    0.475
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.