STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH06378.1Hypothetical protein. (640 aa)    
Predicted Functional Partners:
SDH06342.1
N-carbamoylputrescine amidase.
  
    0.607
SDH06312.1
Agmatine deiminase; Belongs to the agmatine deiminase family.
       0.603
SDG66129.1
LysM domain-containing protein.
  
 
 
 0.567
SDH13302.1
Outer membrane lipoprotein-sorting protein.
  
     0.561
SDG06482.1
Hypothetical protein.
  
     0.560
SDG43757.1
S1/P1 Nuclease.
  
     0.551
SDH43787.1
Hypothetical protein.
 
   0.530
SDE91454.1
Hypothetical protein.
  
     0.522
SDG08812.1
UbiA prenyltransferase family protein.
  
     0.515
SDG07864.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
  0.507
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.