STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH06535.1Glycosyl hydrolase family 20, catalytic domain. (387 aa)    
Predicted Functional Partners:
SDG04231.1
Chitinase.
    
 0.654
SDF73465.1
Predicted acyltransferase.
 
    0.610
SDF69462.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
  
     0.538
SDH06503.1
Hypothetical protein.
       0.538
SDG73041.1
Beta-L-arabinofuranosidase, GH127.
  
     0.514
SDH06440.1
Outer membrane cobalamin receptor protein.
       0.500
SDH06468.1
DNA-binding beta-propeller fold protein YncE.
       0.500
SDG77380.1
Protein of unknown function.
  
   0.464
SDF26743.1
Beta-glucosidase.
    
 0.458
SDF11077.1
Starch-binding associating with outer membrane.
  
     0.453
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
Server load: low (28%) [HD]