STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH21618.1Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family. (605 aa)    
Predicted Functional Partners:
SDH55885.1
Trehalose 6-phosphate synthase /trehalose 6-phosphatase.
 
  
 0.968
SDG15825.1
Maltooligosyl trehalose synthase.
 
  
 0.735
SDG15852.1
Maltooligosyl trehalose hydrolase.
 
 
 0.684
SDG58958.1
Alpha amylase, catalytic domain.
 
  
 0.665
SDH21592.1
Hypothetical protein.
       0.568
SDG15904.1
Glycogen operon protein; Belongs to the glycosyl hydrolase 13 family.
 
  
 0.534
SDF73505.1
Alpha,alpha-trehalase.
  
  
  0.479
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 
 0.457
SDH54104.1
Small-conductance mechanosensitive channel.
  
    0.435
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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