STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH28901.1Lysophospholipase L1. (583 aa)    
Predicted Functional Partners:
SDH28316.1
Predicted dehydrogenase.
  
     0.681
SDF56612.1
Starch-binding associating with outer membrane.
  
 
   0.676
SDF62602.1
Starch-binding associating with outer membrane.
  
 
   0.654
SDG46156.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
 
     0.650
SDG61615.1
Processive endocellulase.
  
 0.604
SDF70012.1
Starch-binding associating with outer membrane.
  
 
   0.575
SDG57966.1
Starch-binding associating with outer membrane.
  
 
   0.542
SDG23088.1
Ricin-type beta-trefoil lectin domain-like.
    
 0.524
SDG89868.1
Glycosyl hydrolases family 2, sugar binding domain; Belongs to the glycosyl hydrolase 2 family.
  
  0.521
SDF62401.1
Sugar phosphate isomerase/epimerase.
  
     0.516
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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