STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH34736.1SusD family protein. (467 aa)    
Predicted Functional Partners:
SDH34774.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.938
SDG44881.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.775
SDH57925.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.775
SDH34701.1
Protein of unknown function.
       0.773
SDH34634.1
Peroxiredoxin.
       0.768
SDH34666.1
PKD-like family protein.
       0.768
SDF50764.1
SusD family protein.
  
     0.709
SDF78472.1
SusD family protein.
  
     0.701
SDH34806.1
FecR protein.
 
     0.682
SDG60989.1
Susd and RagB outer membrane lipoprotein.
  
 
   0.663
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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