STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH43787.1Hypothetical protein. (172 aa)    
Predicted Functional Partners:
SDH43825.1
Protein of unknown function.
 
   0.779
SDG38127.1
RNA polymerase sigma factor, sigma-70 family.
  
     0.748
SDH27468.1
RNA polymerase sigma factor, sigma-70 family.
  
     0.735
SDE97874.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.692
SDF01499.1
Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.656
SDH45668.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.639
SDF01167.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.601
SDG38154.1
Ferric-dicitrate binding protein FerR, regulates iron transport through sigma-19.
 
   0.587
SDF11139.1
FecR protein.
  
   0.579
SDF83777.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.574
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.