STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH48324.1Iron complex outermembrane recepter protein. (669 aa)    
Predicted Functional Partners:
SDH48246.1
HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes.
 
     0.938
SDH48284.1
Nicotinamide mononucleotide transporter.
 
  
 0.902
SDH48208.1
Uncharacterized protein YigE, DUF2233 family.
       0.697
SDG23217.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.537
SDF51014.1
TonB-linked outer membrane protein, SusC/RagA family.
  
    0.526
SDF14315.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.522
SDG93107.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.512
SDG65298.1
TonB family C-terminal domain-containing protein.
  
   0.499
SDG80676.1
Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
   0.497
SDH48356.1
Hypothetical protein.
       0.490
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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