STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH48496.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (202 aa)    
Predicted Functional Partners:
SDH24902.1
PAS fold-containing protein.
   
 0.973
SDH43724.1
Signal transduction histidine kinase.
   
 0.909
SDF10190.1
Signal transduction histidine kinase.
   
 0.880
SDF69433.1
Signal transduction histidine kinase.
 
 0.877
SDH43495.1
PAS domain S-box-containing protein.
 
 0.877
SDF00171.1
Signal transduction histidine kinase.
  
   0.830
SDH59240.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
   0.828
SDG25609.1
Signal transduction histidine kinase.
  
   0.826
SDG57324.1
Histidine kinase.
  
   0.821
SDG10209.1
Signal transduction histidine kinase.
  
   0.820
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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