STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH64236.1alpha-L-rhamnosidase. (1263 aa)    
Predicted Functional Partners:
SDH64198.1
Sugar phosphate isomerase/epimerase.
     0.939
SDH64262.1
BNR repeat-like domain-containing protein.
 
    0.884
SDH64295.1
Hypothetical protein.
 
     0.855
SDH64166.1
Hypothetical protein.
    0.854
SDG71587.1
Putative collagen-binding domain of a collagenase.
 
    0.731
SDH20046.1
Right handed beta helix region.
 
     0.678
SDH20102.1
Hypothetical protein.
 
    0.676
SDH20019.1
Acetyl xylan esterase (AXE1).
 
     0.666
SDH64114.1
Alpha-L-rhamnosidase N-terminal domain-containing protein.
 
    
0.554
SDH64133.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
     0.547
Your Current Organism:
Chitinophaga filiformis
NCBI taxonomy Id: 104663
Other names: ATCC 29495, C. filiformis, CCUG 12809, CIP 106401, DSM 527, Flexibacter filiformis, IFO 15056, JCM 21160, Myxococcus filiformis, NBRC 15056, strain Fx e1 Reichenbach
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