Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDG06735.1 | SDH67267.1 | SAMN04488121_103356 | SAMN04488121_1183 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Phosphate starvation-inducible protein PhoH. | 0.567 |
SDG06735.1 | era | SAMN04488121_103356 | SAMN04488121_105345 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.881 |
SDG06735.1 | ybeY | SAMN04488121_103356 | SAMN04488121_1011229 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | rRNA maturation RNase YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.421 |
SDG50147.1 | SDG50237.1 | SAMN04488121_104484 | SAMN04488121_104487 | Ribonuclease G. | DNA-binding protein HU-beta; Belongs to the bacterial histone-like protein family. | 0.455 |
SDG50147.1 | SDH67267.1 | SAMN04488121_104484 | SAMN04488121_1183 | Ribonuclease G. | Phosphate starvation-inducible protein PhoH. | 0.467 |
SDG50147.1 | clpX | SAMN04488121_104484 | SAMN04488121_104121 | Ribonuclease G. | ATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. | 0.444 |
SDG50237.1 | SDG50147.1 | SAMN04488121_104487 | SAMN04488121_104484 | DNA-binding protein HU-beta; Belongs to the bacterial histone-like protein family. | Ribonuclease G. | 0.455 |
SDG50237.1 | SDH13715.1 | SAMN04488121_104487 | SAMN04488121_10948 | DNA-binding protein HU-beta; Belongs to the bacterial histone-like protein family. | Preprotein translocase subunit YajC. | 0.404 |
SDG50237.1 | SDH67267.1 | SAMN04488121_104487 | SAMN04488121_1183 | DNA-binding protein HU-beta; Belongs to the bacterial histone-like protein family. | Phosphate starvation-inducible protein PhoH. | 0.532 |
SDG50237.1 | clpX | SAMN04488121_104487 | SAMN04488121_104121 | DNA-binding protein HU-beta; Belongs to the bacterial histone-like protein family. | ATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. | 0.461 |
SDG56844.1 | SDH67267.1 | SAMN04488121_10543 | SAMN04488121_1183 | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Phosphate starvation-inducible protein PhoH. | 0.459 |
SDG56844.1 | rsfS | SAMN04488121_10543 | SAMN04488121_101936 | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Ribosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.592 |
SDH13715.1 | SDG50237.1 | SAMN04488121_10948 | SAMN04488121_104487 | Preprotein translocase subunit YajC. | DNA-binding protein HU-beta; Belongs to the bacterial histone-like protein family. | 0.404 |
SDH13715.1 | SDH67267.1 | SAMN04488121_10948 | SAMN04488121_1183 | Preprotein translocase subunit YajC. | Phosphate starvation-inducible protein PhoH. | 0.550 |
SDH13715.1 | ybeY | SAMN04488121_10948 | SAMN04488121_1011229 | Preprotein translocase subunit YajC. | rRNA maturation RNase YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.454 |
SDH67267.1 | SDG06735.1 | SAMN04488121_1183 | SAMN04488121_103356 | Phosphate starvation-inducible protein PhoH. | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | 0.567 |
SDH67267.1 | SDG50147.1 | SAMN04488121_1183 | SAMN04488121_104484 | Phosphate starvation-inducible protein PhoH. | Ribonuclease G. | 0.467 |
SDH67267.1 | SDG50237.1 | SAMN04488121_1183 | SAMN04488121_104487 | Phosphate starvation-inducible protein PhoH. | DNA-binding protein HU-beta; Belongs to the bacterial histone-like protein family. | 0.532 |
SDH67267.1 | SDG56844.1 | SAMN04488121_1183 | SAMN04488121_10543 | Phosphate starvation-inducible protein PhoH. | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.459 |
SDH67267.1 | SDH13715.1 | SAMN04488121_1183 | SAMN04488121_10948 | Phosphate starvation-inducible protein PhoH. | Preprotein translocase subunit YajC. | 0.550 |
page 1 of 3