STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW53150.1Hypothetical protein. (106 aa)    
Predicted Functional Partners:
SDW53107.1
MFS transporter, ACDE family, multidrug resistance protein.
       0.590
SDW53403.1
Stage III sporulation protein AF.
 
     0.586
SDW64312.1
Tetratricopeptide repeat-containing protein.
  
     0.553
SDW53193.1
Stage III sporulation protein AA.
       0.545
SDW53236.1
Stage III sporulation protein AB.
       0.545
SDX45988.1
AAA domain-containing protein.
  
     0.540
SDX28103.1
Hypothetical protein.
  
     0.538
SDX46150.1
Tetratricopeptide repeat-containing protein.
  
     0.534
SDW00111.1
Transcriptional regulator, contains XRE-family HTH domain.
  
     0.524
SDW53281.1
Stage III sporulation protein AC.
       0.522
Your Current Organism:
Marininema mesophilum
NCBI taxonomy Id: 1048340
Other names: CCTCC AA 2011006, DSM 45610, M. mesophilum, Marininema mesophilum Li et al. 2012, SCSIO 10219, Thermoactinomycetaceae bacterium SCSIO 10219
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.