STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F3D3_1838N-acetyl-L,L-diaminopimelate deacetylase. (399 aa)    
Predicted Functional Partners:
F3D3_1837
D-aminopeptidase dipeptide-binding protein DppA.
  
    0.777
F3D3_2973
Glutamate synthase [NADPH] large chain.
    
  0.771
F3D3_1836
Hypothetical protein.
       0.639
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
    
 0.630
dapH
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase; Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.
  
  
 0.469
F3D3_1835
ATPase components of ABC transporters with duplicated ATPase domains.
  
    0.455
F3D3_0114
Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3).
    
  0.446
F3D3_0842
Xaa-His dipeptidase.
    
 0.436
F3D3_0962
Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase; Related deacylases.
    
 0.436
F3D3_3354
Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase and related deacylases.
    
 0.436
Your Current Organism:
Fusibacter sp. 3D3
NCBI taxonomy Id: 1048380
Other names: F. sp. 3D3, Fusibacter sp. 3-D3-R-P8ASC2010, Fusibacter sp. ATCC BAA-2418
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