F3D3_3997 protein (Fusibacter sp. 3D3) - STRING interaction network

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Score

F3D3_3997

C-125 initiation factor IF-I; RNA polymerase alpha subunit and ribosomal protein. (93 aa)

Predicted Functional Partners:

rplO

0.999

rpmD

0.999

rplR

0.999

rplF

0.999

rplX

0.999

rpmC

0.999

rplV

0.999

rplW

0.999

rplJ

0.999

rplE

0.998

Your Current Organism:

Fusibacter sp. 3D3

NCBI taxonomy Id: 1048380
Other names: F. sp. 3D3, Fusibacter sp. 3-D3-R-P8ASC2010, Fusibacter sp. ATCC BAA-2418

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F3D3_3997	rplE	F3D3_3997	F3D3_4008	C-125 initiation factor IF-I; RNA polymerase alpha subunit and ribosomal protein.	Large subunit ribosomal protein L5p; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	0.998
F3D3_3997	rplF	F3D3_3997	F3D3_4005	C-125 initiation factor IF-I; RNA polymerase alpha subunit and ribosomal protein.	Large subunit ribosomal protein L6p; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.	0.999
F3D3_3997	rplJ	F3D3_3997	F3D3_4364	C-125 initiation factor IF-I; RNA polymerase alpha subunit and ribosomal protein.	Large subunit ribosomal protein L10p; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.999
F3D3_3997	rplO	F3D3_3997	F3D3_4001	C-125 initiation factor IF-I; RNA polymerase alpha subunit and ribosomal protein.	Large subunit ribosomal protein L15p; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.999
F3D3_3997	rplR	F3D3_3997	F3D3_4004	C-125 initiation factor IF-I; RNA polymerase alpha subunit and ribosomal protein.	Large subunit ribosomal protein L18p; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.999
F3D3_3997	rplV	F3D3_3997	F3D3_4015	C-125 initiation factor IF-I; RNA polymerase alpha subunit and ribosomal protein.	Large subunit ribosomal protein L22p; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.999
F3D3_3997	rplW	F3D3_3997	F3D3_4018	C-125 initiation factor IF-I; RNA polymerase alpha subunit and ribosomal protein.	Large subunit ribosomal protein L23p; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.999
F3D3_3997	rplX	F3D3_3997	F3D3_4009	C-125 initiation factor IF-I; RNA polymerase alpha subunit and ribosomal protein.	Large subunit ribosomal protein L24p; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.999
F3D3_3997	rpmC	F3D3_3997	F3D3_4012	C-125 initiation factor IF-I; RNA polymerase alpha subunit and ribosomal protein.	Large subunit ribosomal protein L29p; L35e; Belongs to the universal ribosomal protein uL29 family.	0.999
F3D3_3997	rpmD	F3D3_3997	F3D3_4002	C-125 initiation factor IF-I; RNA polymerase alpha subunit and ribosomal protein.	Large subunit ribosomal protein L30p; L7e.	0.999
rplE	F3D3_3997	F3D3_4008	F3D3_3997	Large subunit ribosomal protein L5p; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	C-125 initiation factor IF-I; RNA polymerase alpha subunit and ribosomal protein.	0.998
rplE	rplF	F3D3_4008	F3D3_4005	Large subunit ribosomal protein L5p; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	Large subunit ribosomal protein L6p; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.	0.999
rplE	rplJ	F3D3_4008	F3D3_4364	Large subunit ribosomal protein L5p; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	Large subunit ribosomal protein L10p; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.997
rplE	rplO	F3D3_4008	F3D3_4001	Large subunit ribosomal protein L5p; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	Large subunit ribosomal protein L15p; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.999
rplE	rplR	F3D3_4008	F3D3_4004	Large subunit ribosomal protein L5p; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	Large subunit ribosomal protein L18p; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.999
rplE	rplV	F3D3_4008	F3D3_4015	Large subunit ribosomal protein L5p; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	Large subunit ribosomal protein L22p; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.999
rplE	rplW	F3D3_4008	F3D3_4018	Large subunit ribosomal protein L5p; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	Large subunit ribosomal protein L23p; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.999
rplE	rplX	F3D3_4008	F3D3_4009	Large subunit ribosomal protein L5p; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	Large subunit ribosomal protein L24p; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.999
rplE	rpmC	F3D3_4008	F3D3_4012	Large subunit ribosomal protein L5p; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	Large subunit ribosomal protein L29p; L35e; Belongs to the universal ribosomal protein uL29 family.	0.999
rplE	rpmD	F3D3_4008	F3D3_4002	Large subunit ribosomal protein L5p; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	Large subunit ribosomal protein L30p; L7e.	0.999