F3D3_4060 protein (Fusibacter sp. 3D3) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

F3D3_4060

Type IV pilin PilA. (128 aa)

Predicted Functional Partners:

F3D3_4057

0.996

F3D3_4059

0.994

F3D3_4056

0.906

F3D3_4058

0.901

F3D3_4065

0.837

F3D3_1557

0.762

F3D3_2083

0.751

F3D3_4546

0.734

F3D3_4070

0.651

F3D3_4061

0.596

Your Current Organism:

Fusibacter sp. 3D3

NCBI taxonomy Id: 1048380
Other names: F. sp. 3D3, Fusibacter sp. 3-D3-R-P8ASC2010, Fusibacter sp. ATCC BAA-2418

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
F3D3_1557	F3D3_2083	Twitching motility protein PilT.	ComE-like protein; Metallo beta-lactamase superfamily hydrolase.	0.440
F3D3_1557	F3D3_4056	Twitching motility protein PilT.	Leader prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	0.807
F3D3_1557	F3D3_4057	Twitching motility protein PilT.	Type IV fimbrial assembly ATPase PilB.	0.765
F3D3_1557	F3D3_4059	Twitching motility protein PilT.	Type IV fimbrial assembly protein PilC.	0.860
F3D3_1557	F3D3_4060	Twitching motility protein PilT.	Type IV pilin PilA.	0.762
F3D3_1557	F3D3_4065	Twitching motility protein PilT.	Type IV pilus biogenesis protein PilM.	0.783
F3D3_2083	F3D3_1557	ComE-like protein; Metallo beta-lactamase superfamily hydrolase.	Twitching motility protein PilT.	0.440
F3D3_2083	F3D3_4056	ComE-like protein; Metallo beta-lactamase superfamily hydrolase.	Leader prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	0.753
F3D3_2083	F3D3_4057	ComE-like protein; Metallo beta-lactamase superfamily hydrolase.	Type IV fimbrial assembly ATPase PilB.	0.727
F3D3_2083	F3D3_4058	ComE-like protein; Metallo beta-lactamase superfamily hydrolase.	Twitching motility protein PilT.	0.440
F3D3_2083	F3D3_4059	ComE-like protein; Metallo beta-lactamase superfamily hydrolase.	Type IV fimbrial assembly protein PilC.	0.808
F3D3_2083	F3D3_4060	ComE-like protein; Metallo beta-lactamase superfamily hydrolase.	Type IV pilin PilA.	0.751
F3D3_2083	F3D3_4065	ComE-like protein; Metallo beta-lactamase superfamily hydrolase.	Type IV pilus biogenesis protein PilM.	0.574
F3D3_2083	F3D3_4070	ComE-like protein; Metallo beta-lactamase superfamily hydrolase.	Hypothetical protein.	0.715
F3D3_4056	F3D3_1557	Leader prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Twitching motility protein PilT.	0.807
F3D3_4056	F3D3_2083	Leader prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	ComE-like protein; Metallo beta-lactamase superfamily hydrolase.	0.753
F3D3_4056	F3D3_4057	Leader prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type IV fimbrial assembly ATPase PilB.	0.940
F3D3_4056	F3D3_4058	Leader prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Twitching motility protein PilT.	0.877
F3D3_4056	F3D3_4059	Leader prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type IV fimbrial assembly protein PilC.	0.929
F3D3_4056	F3D3_4060	Leader prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type IV pilin PilA.	0.906