STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKK03282.1acyl-CoA thioesterase. (286 aa)    
Predicted Functional Partners:
pdxT
Pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS.
     
 0.908
fadD15
AMP-forming long-chain acyl-CoA synthetase.
   
 
 0.814
AKK03283.1
Integral membrane protein.
       0.697
AKK02878.1
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
   
 0.693
AKK03280.1
DNA-binding regulatory protein, YebC/PmpR family.
       0.655
pdxS
Pyridoxal phosphate synthase yaaD subunit; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family.
  
  
 0.633
fasB
Fatty acid synthase.
   
 
 0.500
nudC
NUDIX family protein.
  
     0.454
AKK03287.1
Lauroyl/myristoyl acyltransferase.
 
     0.449
AKK03289.1
HIT family hydrolase, diadenosine tetraphosphate hydrolase.
  
    0.443
Your Current Organism:
Corynebacterium epidermidicanis
NCBI taxonomy Id: 1050174
Other names: C. epidermidicanis, CCUG 60915, Corynebacterium epidermidicanis Frischmann et al. 2012, Corynebacterium sp. DSM 45586, DSM 45586, LMG 26322, LMG:26322, strain 410
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