STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
virB9Conjugal transfer protein TrbG/VirB9/CagX. (351 aa)    
Predicted Functional Partners:
EGP55780.1
Conjugation TrbI-like protein.
 
 
 0.996
virB10
Conjugation TrbI family protein.
 
 
 0.992
cag23
Conjugal transfer protein TrbE.
 
  
 0.977
EGP55777.1
Conjugal transfer protein TrbL.
 
   
 0.952
virB5
Conjugal transfer protein.
 
   
 0.952
EGP55775.1
P-type conjugative transfer protein TrbJ.
 
   
 0.949
virB2
Conjugal transfer protein TrbC.
 
   
 0.942
EGP55773.1
Conjugal transfer protein.
 
   
 0.938
virB4
AAA ATPase.
 
  
 0.914
EGP55771.1
P-type conjugative transfer ATPase TrbB.
 
   
 0.861
Your Current Organism:
Agrobacterium tumefaciens
NCBI taxonomy Id: 1050720
Other names: A. tumefaciens F2, Agrobacterium tumefaciens F2, Agrobacterium tumefaciens str. F2, Agrobacterium tumefaciens strain F2, Rhizobium radiobacter F2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.