STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpoE-7ECF family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (169 aa)    
Predicted Functional Partners:
EGP54925.1
Transmembrane sensor.
 
 
 0.931
EGP54976.1
FecR protein.
 
 
 0.813
EGP54660.1
Two component sensor kinase.
 
 
 0.813
EGP54926.1
Heme receptor.
 
  
 0.628
EGP54975.1
Sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.554
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.548
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 0.547
EGP54923.1
DNA polymerase III subunit epsilon.
       0.476
EGP56262.1
Two component sensor kinase.
  
 
 0.464
EGP56576.1
Hypothetical protein.
  
 
 0.462
Your Current Organism:
Agrobacterium tumefaciens
NCBI taxonomy Id: 1050720
Other names: A. tumefaciens F2, Agrobacterium tumefaciens F2, Agrobacterium tumefaciens str. F2, Agrobacterium tumefaciens strain F2, Rhizobium radiobacter F2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.