STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D7B24_003694Uncharacterized protein. (494 aa)    
Predicted Functional Partners:
D7B24_007723
Uncharacterized protein.
     
 0.765
D7B24_007990
WD_REPEATS_REGION domain-containing protein.
   
 
 0.714
SRRM1
Serine/arginine repetitive matrix protein 1.
     
 0.648
D7B24_004035
Sde2_N_Ubi domain-containing protein.
    
 0.626
CYP8
Peptidyl-prolyl cis-trans isomerase cyp8.
   
 
  0.589
MTR4
ATP-dependent RNA helicase mtr4.
     
 0.567
D7B24_007707
Uncharacterized protein.
     
 0.522
D7B24_005647
RRM domain-containing protein.
    
  0.519
D7B24_005949
RRM domain-containing protein.
    
  0.519
D7B24_004717
UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family.
 
      0.431
Your Current Organism:
Verticillium nonalfalfae
NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.