STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D7B24_008005Uncharacterized protein. (162 aa)    
Predicted Functional Partners:
TUF1
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
  
 
 0.999
D7B24_004034
S10_plectin domain-containing protein.
   
 0.999
RPS29
40S ribosomal protein S29.
  
 0.999
RPL35
60S ribosomal protein L35.
  
 
 0.999
RPS16
40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.
  
 0.999
RRP5
rRNA bioproteinsis protein rrp5.
  
 0.999
RPL7
60S ribosomal protein L7.
  
 
 0.999
RPS27
40S ribosomal protein S27.
   
 0.999
RPS13
Ribosomal 40S subunit protein S13; Belongs to the universal ribosomal protein uS15 family.
   
 0.999
RPS7
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
   
 0.999
Your Current Organism:
Verticillium nonalfalfae
NCBI taxonomy Id: 1051616
Other names: CBS 130339, NRRL 54791, PD592, UC 1953898, V. nonalfalfae, Verticillium sp. PI-2011d
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