Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY51415.1Hypothetical protein. (236 aa)    
Predicted Functional Partners:
lytR_1
Transcriptional regulator LytR.
     
 0.812
AMY54615.1
Hypothetical protein.
  
     0.751
AMY52089.1
Hypothetical protein.
  
     0.606
AMY54908.1
Hypothetical protein.
  
     0.592
mshD_7
Mycothiol acetyltransferase.
  
     0.581
AMY56054.1
Hypothetical protein.
 
  
 0.571
AMY53335.1
Hypothetical protein.
  
     0.569
fabF_2
3-oxoacyl-[acyl-carrier-protein] synthase 2.
  
 
 0.542
rmlD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
     
 0.499
AMY55620.1
Hypothetical protein.
  
     0.479
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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