accD5_1 protein (Rhodococcus fascians D188) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

accD5_1

Putative propionyl-CoA carboxylase beta chain 5. (546 aa)

Predicted Functional Partners:

fabF_2

0.984

accC_1

0.976

accC_2

0.976

AMY54889.1

0.970

ppsA

0.960

kipA_1

0.949

paaJ_2

0.936

pdhC_1

0.930

bkdC

0.930

acrC_1

0.930

Your Current Organism:

Rhodococcus fascians D188

NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMY54889.1	accC_1	A3L23_03567	A3L23_00076	Hypothetical protein.	Biotin carboxylase.	0.905
AMY54889.1	accC_2	A3L23_03567	A3L23_00378	Hypothetical protein.	Biotin carboxylase.	0.905
AMY54889.1	accD5_1	A3L23_03567	A3L23_00063	Hypothetical protein.	Putative propionyl-CoA carboxylase beta chain 5.	0.970
accC_1	AMY54889.1	A3L23_00076	A3L23_03567	Biotin carboxylase.	Hypothetical protein.	0.905
accC_1	accC_2	A3L23_00076	A3L23_00378	Biotin carboxylase.	Biotin carboxylase.	0.900
accC_1	accD5_1	A3L23_00076	A3L23_00063	Biotin carboxylase.	Putative propionyl-CoA carboxylase beta chain 5.	0.976
accC_1	acrC_1	A3L23_00076	A3L23_02825	Biotin carboxylase.	Acryloyl-CoA reductase (NADH).	0.918
accC_1	bkdC	A3L23_00076	A3L23_02244	Biotin carboxylase.	Dihydrolipoyllysine-residue acyltransferase component of branched-chain alpha-ketoacid dehydrogenase complex.	0.919
accC_1	fabF_2	A3L23_00076	A3L23_03591	Biotin carboxylase.	3-oxoacyl-[acyl-carrier-protein] synthase 2.	0.993
accC_1	kipA_1	A3L23_00076	A3L23_01647	Biotin carboxylase.	KipI antagonist.	0.976
accC_1	paaJ_2	A3L23_00076	A3L23_04449	Biotin carboxylase.	3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.924
accC_1	pdhC_1	A3L23_00076	A3L23_00325	Biotin carboxylase.	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex.	0.919
accC_1	ppsA	A3L23_00076	A3L23_02032	Biotin carboxylase.	Phthiocerol synthesis polyketide synthase type I PpsA.	0.926
accC_2	AMY54889.1	A3L23_00378	A3L23_03567	Biotin carboxylase.	Hypothetical protein.	0.905
accC_2	accC_1	A3L23_00378	A3L23_00076	Biotin carboxylase.	Biotin carboxylase.	0.900
accC_2	accD5_1	A3L23_00378	A3L23_00063	Biotin carboxylase.	Putative propionyl-CoA carboxylase beta chain 5.	0.976
accC_2	acrC_1	A3L23_00378	A3L23_02825	Biotin carboxylase.	Acryloyl-CoA reductase (NADH).	0.918
accC_2	bkdC	A3L23_00378	A3L23_02244	Biotin carboxylase.	Dihydrolipoyllysine-residue acyltransferase component of branched-chain alpha-ketoacid dehydrogenase complex.	0.919
accC_2	fabF_2	A3L23_00378	A3L23_03591	Biotin carboxylase.	3-oxoacyl-[acyl-carrier-protein] synthase 2.	0.993
accC_2	kipA_1	A3L23_00378	A3L23_01647	Biotin carboxylase.	KipI antagonist.	0.976