Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AMY51425.1Hypothetical protein. (89 aa)    
Predicted Functional Partners:
kipA_1
KipI antagonist.
   
 
 0.949
accD5_1
Putative propionyl-CoA carboxylase beta chain 5.
  
 
 0.927
AMY51426.1
Maf-like protein; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
     
 0.891
accC_3
Biotin carboxylase.
  
 
 0.870
birA
Bifunctional ligase/repressor BirA.
     
 0.699
kipA_2
KipI antagonist.
    
   0.697
kipI
Kinase A inhibitor.
    
   0.697
accC_1
Biotin carboxylase.
   
 
 0.642
accC_2
Biotin carboxylase.
   
 
 0.642
accA1_1
Acetyl-/propionyl-coenzyme A carboxylase alpha chain.
   
 
 0.642
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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