Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
xdhA_1Xanthine dehydrogenase molybdenum-binding subunit. (904 aa)    
Predicted Functional Partners:
AMY51452.1
Hypothetical protein.
 
 
 0.998
kdhA_1
6-hydroxypseudooxynicotine dehydrogenase complex subunit alpha.
 
 
 0.967
hcrB
4-hydroxybenzoyl-CoA reductase subunit beta.
 
 0.956
kdhA_2
6-hydroxypseudooxynicotine dehydrogenase complex subunit alpha.
 
 
 0.954
cysNC
Bifunctional enzyme CysN/CysC; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
     
 0.915
trxB_2
Thioredoxin reductase.
    
  0.902
trxB_1
Thioredoxin reductase.
    
  0.901
cysD
Sulfate adenylyltransferase subunit 2.
     
  0.900
pucA_1
Putative xanthine dehydrogenase subunit A.
 
  
 0.872
pucA_2
Putative xanthine dehydrogenase subunit A.
 
  
 0.870
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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