Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
puuBGamma-glutamylputrescine oxidoreductase. (473 aa)    
Predicted Functional Partners:
AMY51488.1
Putative aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.893
asnC_1
Regulatory protein AsnC.
 
  
 0.890
soxA
Sarcosine oxidase subunit alpha.
 
 
 0.874
prr_1
Gamma-aminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
  
 0.816
soxD
Sarcosine oxidase subunit delta.
 
 
 0.539
dmg_1
Dimethylglycine oxidase; Belongs to the GcvT family.
 
 
 0.511
soxG
Sarcosine oxidase subunit gamma.
 
 
 0.479
gatA_2
Glutamyl-tRNA(Gln) amidotransferase subunit A.
  
 
  0.465
gabT_2
4-aminobutyrate aminotransferase GabT; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.453
fadH
2,4-dienoyl-CoA reductase [NADPH].
  
 
 0.428
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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