Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dacFD-alanyl-D-alanine carboxypeptidase DacF; Belongs to the peptidase S11 family. (438 aa)    
Predicted Functional Partners:
pbpB
Penicillin-binding protein PbpB.
 
 
 0.969
dac
D-alanyl-D-alanine carboxypeptidase.
     
 0.960
pbpA_2
Penicillin-binding protein A.
 
 
 0.957
lytC_1
N-acetylmuramoyl-L-alanine amidase LytC.
 
  
 0.610
AMY51498.1
Hypothetical protein.
     
 0.513
ponA1
Penicillin-binding protein 1A.
 
  
 0.511
pbpG
Penicillin-binding protein 2D.
 
  
 0.504
secD
Hypothetical protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
  
  
 0.488
ftsW
Putative lipid II flippase FtsW; Belongs to the SEDS family.
 
  
 0.471
mglA_1
Galactose/methyl galactoside import ATP-binding protein MglA.
       0.461
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.