Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
yhfQ_1Putative ABC transporter substrate-binding lipoprotein YhfQ. (338 aa)    
Predicted Functional Partners:
yusV_2
Putative siderophore transport system ATP-binding protein YusV.
 
 
 0.864
yusV_1
Putative siderophore transport system ATP-binding protein YusV.
 
 
 0.859
yfiY_8
Putative siderophore-binding lipoprotein YfiY.
  
  
 0.762
yfiY_4
Putative siderophore-binding lipoprotein YfiY.
  
  
 0.749
yfiZ
Putative siderophore transport system permease protein YfiZ; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.696
fepD
Ferric enterobactin transport system permease protein FepD; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.674
AMY51509.1
Hypothetical protein.
       0.618
fhuC_3
Iron(3+)-hydroxamate import ATP-binding protein FhuC.
 
 
 0.578
feuC
Iron-uptake system permease protein FeuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.495
fhuC_1
Iron(3+)-hydroxamate import ATP-binding protein FhuC.
  
 
 0.493
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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