Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY51514.1Hypothetical protein. (94 aa)    
Predicted Functional Partners:
AMY56050.1
Hypothetical protein.
  
     0.683
folD_1
Bifunctional protein FolD protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
       0.679
AMY54438.1
Hypothetical protein.
  
     0.673
embC_2
Putative arabinosyltransferase C.
  
     0.655
AMY51481.1
Hypothetical protein.
  
     0.652
embC_1
Putative arabinosyltransferase C.
  
     0.639
embB
Putative arabinosyltransferase B.
  
     0.611
AMY53615.1
Hypothetical protein.
  
     0.591
AMY53923.1
Hypothetical protein.
  
     0.573
AMY51974.1
Intracellular chorismate mutase.
  
     0.537
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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